J4_5T2C_012

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAGUGGAGCCU*GCGCUACACUGACU*AUUCGUGAUGG*CGAGGAAUUC

Length

46 nucleotides

Bulged bases

5T2C|1|AA|U|1535, 5T2C|1|AA|G|1598, 5T2C|1|AA|G|1603, 5T2C|1|AA|G|1639

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2C|1|AA|G|1222
5T2C|1|AA|A|1223
5T2C|1|AA|G|1224
5T2C|1|AA|U|1225
5T2C|1|AA|G|1226
5T2C|1|AA|G|1227
5T2C|1|AA|A|1228
5T2C|1|AA|G|1229
5T2C|1|AA|C|1230
5T2C|1|AA|C|1231
5T2C|1|AA|U|1232
*
5T2C|1|AA|G|1526
5T2C|1|AA|C|1527
5T2C|1|AA|G|1528
5T2C|1|AA|C|1529
5T2C|1|AA|U|1530
5T2C|1|AA|A|1531
5T2C|1|AA|C|1532
5T2C|1|AA|A|1533
5T2C|1|AA|C|1534
5T2C|1|AA|U|1535
5T2C|1|AA|G|1536
5T2C|1|AA|A|1537
5T2C|1|AA|C|1538
5T2C|1|AA|U|1539
*
5T2C|1|AA|A|1594
5T2C|1|AA|U|1595
5T2C|1|AA|U|1596
5T2C|1|AA|C|1597
5T2C|1|AA|G|1598
5T2C|1|AA|U|1599
5T2C|1|AA|G|1600
5T2C|1|AA|A|1601
5T2C|1|AA|U|1602
5T2C|1|AA|G|1603
5T2C|1|AA|G|1604
*
5T2C|1|AA|C|1635
5T2C|1|AA|G|1636
5T2C|1|AA|A|1637
5T2C|1|AA|G|1638
5T2C|1|AA|G|1639
5T2C|1|AA|A|1640
5T2C|1|AA|A|1641
5T2C|1|AA|U|1642
5T2C|1|AA|U|1643
5T2C|1|AA|C|1644

Current chains

Chain AA

18S rRNA

Nearby chains

Chain A0

40S ribosomal protein S18

Chain AB

40S ribosomal protein S20

Chain AR

40S ribosomal protein S25

Chain AU

40S ribosomal protein S19

Chain An

Transfer RNA; tRNA

Chain As

40S ribosomal protein S5

Chain Ay

40S ribosomal protein S16