J4_5T2C_013

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGCCAGU*AAAGUUGCUGC*GGG*UAAAG

Length

27 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2C|1|AA|C|14
5T2C|1|AA|U|15
5T2C|1|AA|G|16
5T2C|1|AA|C|17
5T2C|1|AA|C|18
5T2C|1|AA|A|19
5T2C|1|AA|G|20
5T2C|1|AA|U|21
*
5T2C|1|AA|A|653
5T2C|1|AA|A|654
5T2C|1|AA|A|655
5T2C|1|AA|G|656
5T2C|1|AA|U|657
5T2C|1|AA|U|658
5T2C|1|AA|G|659
5T2C|1|AA|C|660
5T2C|1|AA|U|661
5T2C|1|AA|G|662
5T2C|1|AA|C|663
*
5T2C|1|AA|G|1164
5T2C|1|AA|G|1165
5T2C|1|AA|G|1166
*
5T2C|1|AA|U|1193
5T2C|1|AA|A|1194
5T2C|1|AA|A|1195
5T2C|1|AA|A|1196
5T2C|1|AA|G|1197

Current chains

Chain AA

18S rRNA

Nearby chains

Chain AD

40S ribosomal protein S23

Chain AJ

40S ribosomal protein S2

Chain AL

40S ribosomal protein S9

Chain AP

40S ribosomal protein S15a

Chain Aw

40S ribosomal protein S11