J4_5T2C_015
3D structure
- PDB id
- 5T2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the human ribosome at 3.6 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UGGAGCCU*GCGCUACACUGACU*AUUCGUGAUGG*CGAGGAA
- Length
- 40 nucleotides
- Bulged bases
- 5T2C|1|AA|U|1535, 5T2C|1|AA|G|1598, 5T2C|1|AA|G|1603, 5T2C|1|AA|G|1639
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5T2C|1|AA|U|1225
5T2C|1|AA|G|1226
5T2C|1|AA|G|1227
5T2C|1|AA|A|1228
5T2C|1|AA|G|1229
5T2C|1|AA|C|1230
5T2C|1|AA|C|1231
5T2C|1|AA|U|1232
*
5T2C|1|AA|G|1526
5T2C|1|AA|C|1527
5T2C|1|AA|G|1528
5T2C|1|AA|C|1529
5T2C|1|AA|U|1530
5T2C|1|AA|A|1531
5T2C|1|AA|C|1532
5T2C|1|AA|A|1533
5T2C|1|AA|C|1534
5T2C|1|AA|U|1535
5T2C|1|AA|G|1536
5T2C|1|AA|A|1537
5T2C|1|AA|C|1538
5T2C|1|AA|U|1539
*
5T2C|1|AA|A|1594
5T2C|1|AA|U|1595
5T2C|1|AA|U|1596
5T2C|1|AA|C|1597
5T2C|1|AA|G|1598
5T2C|1|AA|U|1599
5T2C|1|AA|G|1600
5T2C|1|AA|A|1601
5T2C|1|AA|U|1602
5T2C|1|AA|G|1603
5T2C|1|AA|G|1604
*
5T2C|1|AA|C|1635
5T2C|1|AA|G|1636
5T2C|1|AA|A|1637
5T2C|1|AA|G|1638
5T2C|1|AA|G|1639
5T2C|1|AA|A|1640
5T2C|1|AA|A|1641
Current chains
- Chain AA
- 18S rRNA
Nearby chains
- Chain A0
- 40S ribosomal protein S18
- Chain AB
- 40S ribosomal protein S20
- Chain AR
- 40S ribosomal protein S25
- Chain AU
- 40S ribosomal protein S19
- Chain An
- Transfer RNA; tRNA
- Chain As
- 40S ribosomal protein S5
- Chain Ay
- 40S ribosomal protein S16
Coloring options: