J4_5T62_001
3D structure
- PDB id
- 5T62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UC*GAGUCG*CUAAGUG*UAAA
- Length
- 19 nucleotides
- Bulged bases
- 5T62|1|A|U|298
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5T62_001 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.1288
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.1
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
5T62|1|A|U|112
5T62|1|A|C|113
*
5T62|1|A|G|267
5T62|1|A|A|268
5T62|1|A|G|269
5T62|1|A|U|270
5T62|1|A|C|271
5T62|1|A|G|272
*
5T62|1|A|C|293
5T62|1|A|U|294
5T62|1|A|A|295
5T62|1|A|A|296
5T62|1|A|G|297
5T62|1|A|U|298
5T62|1|A|G|299
*
5T62|1|A|U|316
5T62|1|A|A|317
5T62|1|A|A|318
5T62|1|A|A|319
Current chains
- Chain A
- 25S Ribosomal RNA
Nearby chains
- Chain N
- 60S ribosomal protein L13-A
- Chain a
- 60S ribosomal protein L15-A
- Chain u
- 60S ribosomal protein L35-A
- Chain v
- 60S ribosomal protein L36-A
Coloring options: