J4_5T62_004
3D structure
- PDB id
- 5T62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGUUC*GGUUAG*CC*GGUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 5T62|1|A|U|1523
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5T62_004 not in the Motif Atlas
- Homologous match to J4_8P9A_015
- Geometric discrepancy: 0.0842
- The information below is about J4_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_47264.1
- Basepair signature
- cWW-F-cHW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5T62|1|A|G|1492
5T62|1|A|G|1493
5T62|1|A|U|1494
5T62|1|A|U|1495
5T62|1|A|C|1496
*
5T62|1|A|G|1520
5T62|1|A|G|1521
5T62|1|A|U|1522
5T62|1|A|U|1523
5T62|1|A|A|1524
5T62|1|A|G|1525
*
5T62|1|A|C|1614
5T62|1|A|C|1615
*
5T62|1|A|G|1829
5T62|1|A|G|1830
5T62|1|A|U|1831
5T62|1|A|C|1832
5T62|1|A|G|1833
5T62|1|A|U|1834
5T62|1|A|A|1835
5T62|1|A|C|1836
Current chains
- Chain A
- 25S Ribosomal RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain e
- 60S ribosomal protein L19-A
- Chain k
- 60S ribosomal protein L25
- Chain t
- 60S ribosomal protein L34-A
- Chain w
- 60S ribosomal protein L37-A
- Chain x
- 60S ribosomal protein L38
- Chain y
- 60S ribosomal protein L39
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