J4_5T6R_003
3D structure
- PDB id
- 5T6R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CAAAUAU*AG*UGAU*AG
- Length
- 15 nucleotides
- Bulged bases
- 5T6R|1|A|A|1452, 5T6R|1|A|U|1455
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5T6R_003 not in the Motif Atlas
- Homologous match to J4_8P9A_014
- Geometric discrepancy: 0.0896
- The information below is about J4_8P9A_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_87855.1
- Basepair signature
- cWW-F-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
5T6R|1|A|C|1451
5T6R|1|A|A|1452
5T6R|1|A|A|1453
5T6R|1|A|A|1454
5T6R|1|A|U|1455
5T6R|1|A|A|1456
5T6R|1|A|U|1457
*
5T6R|1|A|A|1475
5T6R|1|A|G|1476
*
5T6R|1|A|U|1877
5T6R|1|A|G|1878
5T6R|1|A|A|1879
5T6R|1|A|U|1880
*
5T6R|1|A|A|2352
5T6R|1|A|G|2353
Current chains
- Chain A
- 25S Ribosomal RNA
Nearby chains
- Chain c
- 60S ribosomal protein L17-A
- Chain e
- 60S ribosomal protein L19-A
- Chain q
- 60S ribosomal protein L31-A
Coloring options: