Motif J4_34212.2 Version J4_34212.2 of this group appears in releases 4.7 to 4.7
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | break | 8 | 9 | 10 | 11 | break | 12 | 13 | 1-13 | 4-7 | 5-6 | 7-8 | 11-12 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_9H3G_003 | 9H3G | 0.1879 | 2 | A | LSU rRNA | C | 1460 | A | 1462 | A | 1463 | A | 1465 | U | 1466 | * | A | 1484 | G | 1485 | * | C | 1879 | G | 1880 | A | 1881 | U | 1882 | * | A | 2350 | G | 2351 | cWW | ntSs | cWW | cWW | cWW |
| 2 | J4_8OI5_003 | 8OI5 | 0.0732 | 2 | 1 | LSU rRNA | C | 1447 | A | 1449 | A | 1450 | A | 1452 | U | 1453 | * | A | 1471 | G | 1472 | * | U | 1873 | G | 1874 | A | 1875 | U | 1876 | * | A | 2330 | G | 2331 | cWW | ntSs | cWW | cWW | cWW |
| 3 | J4_8P9A_014 | 8P9A | 0.0000 | 2 | AR | LSU rRNA | C | 1451 | A | 1453 | A | 1454 | A | 1456 | U | 1457 | * | A | 1475 | G | 1476 | * | U | 1877 | G | 1878 | A | 1879 | U | 1880 | * | A | 2352 | G | 2353 | cWW | ntSs | cWW | cWW | cWW |
| 4 | J4_9AXU_003 | 9AXU | 0.1245 | 2 | 2 | LSU rRNA | C | 1485 | A | 1487 | A | 1488 | A | 1490 | U | 1491 | * | A | 1509 | G | 1510 | * | U | 1932 | G | 1933 | A | 1934 | U | 1935 | * | A | 2440 | G | 2441 | cWW | ntSs | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAAUAU*AG*UGAU*AG | 3 |
| CAAAUAU*AG*CGAU*AG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAAUA**GA* | 4 |
Release history
| Release | 4.7 |
|---|---|
| Date | 2026-02-25 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-F-cWW-F-F-F-cWW-F-cWW
- Heat map statistics
- Min 0.07 | Avg 0.11 | Max 0.19
Coloring options: