J4_5T6R_006

3D structure

PDB id

5T6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GACUG*CAUAG*UGAUU*AUUAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5T6R_006 not in the Motif Atlas

Homologous match to J4_8P9A_017

Geometric discrepancy: 0.0743

The information below is about J4_8P9A_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_78485.1

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

6

Unit IDs

5T6R|1|A|G|2130
5T6R|1|A|A|2131
5T6R|1|A|C|2132
5T6R|1|A|U|2133
5T6R|1|A|G|2134
*
5T6R|1|A|C|2146
5T6R|1|A|A|2147
5T6R|1|A|U|2148
5T6R|1|A|A|2149
5T6R|1|A|G|2150
*
5T6R|1|A|U|2186
5T6R|1|A|G|2187
5T6R|1|A|A|2188
5T6R|1|A|U|2189
5T6R|1|A|U|2190
*
5T6R|1|A|A|2317
5T6R|1|A|U|2318
5T6R|1|A|U|2319
5T6R|1|A|A|2320
5T6R|1|A|A|2321
5T6R|1|A|C|2322

Current chains

Chain A

25S Ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L2-A

Chain R

60S ribosomal protein L43-A