J4_5T7V_010

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAGC*GAC*GGACG*CCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5T7V_010 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.1935

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

5T7V|1|B|G|2670
5T7V|1|B|A|2671
5T7V|1|B|G|2672
5T7V|1|B|C|2673
*
5T7V|1|B|G|2701
5T7V|1|B|A|2702
5T7V|1|B|C|2703
*
5T7V|1|B|G|2758
5T7V|1|B|G|2759
5T7V|1|B|A|2760
5T7V|1|B|C|2761
5T7V|1|B|G|2762
*
5T7V|1|B|C|2796
5T7V|1|B|C|2797
5T7V|1|B|C|2798

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain LC

50S ribosomal protein L3

Chain LM

50S ribosomal protein L13

Chain LN

50S ribosomal protein L14