3D structure

PDB id
5TBW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GACUG*CAUAG*UGAUU*AUUAAC
Length
21 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_34476.1
Basepair signature
cWW-F-F-F-F-tWS-tHS-F-cWW-cWW-F-F-tHS-cWW
Number of instances in this motif group
2

Unit IDs

5TBW|1|1|G|2130
5TBW|1|1|A|2131
5TBW|1|1|C|2132
5TBW|1|1|U|2133
5TBW|1|1|G|2134
*
5TBW|1|1|C|2146
5TBW|1|1|A|2147
5TBW|1|1|U|2148
5TBW|1|1|A|2149
5TBW|1|1|G|2150
*
5TBW|1|1|U|2186
5TBW|1|1|G|2187
5TBW|1|1|A|2188
5TBW|1|1|U|2189
5TBW|1|1|U|2190
*
5TBW|1|1|A|2317
5TBW|1|1|U|2318
5TBW|1|1|U|2319
5TBW|1|1|A|2320
5TBW|1|1|A|2321
5TBW|1|1|C|2322

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain A
Small subunit ribosomal RNA; SSU rRNA
Chain AO
60S ribosomal protein L41-A
Chain AQ
60S ribosomal protein L43-A
Chain j
60S ribosomal protein L2-A

Coloring options:

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