#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5break 6 7 8 9 10break 11 12 13 14 15break 16 17 18 19 20 211-212-193-84-75-69-1210-1113-1815-16
1 J4_4V9F_0074V9F0.000000 LSU rRNAG1828A1829C1830U1831G1832*C1844A1845U1846A1847G1848*U1883G1884A1885A1886U1887*A2015U2016U2017A2018A2019C2020cWWtSWntHSantHScWWtHScWWcWW
2 J4_5TBW_0065TBW0.088301 LSU rRNAG2130A2131C2132U2133G2134*C2146A2147U2148A2149G2150*U2186G2187A2188U2189U2190*A2317U2318U2319A2320A2321C2322cWWtSWntHSatHScWWntHScWWntHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
GACUG*CAUAG*UGAAU*AUUAAC1
GACUG*CAUAG*UGAUU*AUUAAC1
Non-Watson-Crick part of the motif
SequenceCounts
ACU*AUA*GAA*UUAA1
ACU*AUA*GAU*UUAA1

Release history

Release3.23.33.43.53.63.73.83.93.103.113.123.133.143.153.163.173.183.193.203.213.223.233.243.253.263.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.453.463.473.483.493.503.513.523.533.543.553.563.573.583.593.603.613.623.633.643.653.663.673.683.693.703.713.723.733.743.753.763.773.783.793.803.813.823.833.843.853.863.873.883.893.90
Date2018-02-092018-03-082018-04-062018-05-042018-06-012018-06-292018-07-272018-08-242018-09-212018-10-192018-11-162018-12-142019-01-112019-02-082019-03-082019-04-052019-05-032019-05-312019-06-282019-07-262019-08-232019-09-192019-10-162019-11-132019-12-112020-01-082020-02-052020-03-042020-04-012020-04-292020-05-272020-06-242020-07-222020-08-192020-09-162020-10-142020-11-112020-12-092021-01-062021-02-032021-03-032021-03-312021-04-282021-05-262021-06-232021-07-212021-08-182021-09-152021-10-132021-11-102021-12-082022-01-052022-02-022022-03-022022-03-302022-04-272022-05-252022-06-222022-07-202022-08-172022-09-142022-10-122022-11-092022-12-072023-01-042023-02-012023-03-012023-03-292023-04-262023-05-242023-06-212023-07-192023-08-162023-09-132023-10-112023-11-082023-12-062024-01-032024-01-312024-02-282024-03-272024-04-242024-05-222024-06-192024-07-172024-08-142024-09-112024-10-092024-11-06
StatusNew id, no parentsExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (2)
  • Basepair signature
    cWW-F-F-F-F-tWS-tHS-F-cWW-cWW-F-F-tHS-cWW
    Heat map statistics
    Min 0.09 | Avg 0.04 | Max 0.09
    Help

    Coloring options:

    J4_4V9F_007:J4_4V9F_007 = 0J4_4V9F_007:J4_5TBW_006 = 0.0883J4_5TBW_006:J4_4V9F_007 = 0.0883J4_5TBW_006:J4_5TBW_006 = 0J4_4V9F_007J4_5TBW_006Discrepancy0.000.020.040.060.08
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