J4_5TCU_006

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GACUG*CACAGGU*GCUGACG*CGUAAC

Length

25 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5TCU|1|B|G|1799
5TCU|1|B|A|1800
5TCU|1|B|C|1801
5TCU|1|B|U|1802
5TCU|1|B|G|1803
*
5TCU|1|B|C|1815
5TCU|1|B|A|1816
5TCU|1|B|C|1817
5TCU|1|B|A|1818
5TCU|1|B|G|1819
5TCU|1|B|G|1820
5TCU|1|B|U|1821
*
5TCU|1|B|G|1852
5TCU|1|B|C|1853
5TCU|1|B|U|1854
5TCU|1|B|G|1855
5TCU|1|B|A|1856
5TCU|1|B|C|1857
5TCU|1|B|G|1858
*
5TCU|1|B|C|2001
5TCU|1|B|G|2002
5TCU|1|B|U|2003
5TCU|1|B|A|2004
5TCU|1|B|A|2005
5TCU|1|B|C|2006

Current chains

Chain B

23S RRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain L2

50S ribosomal protein L2