J4_5TCU_009

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAGC*GAC*GGACG*CCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5TCU_009 not in the Motif Atlas

Homologous match to J4_4WF9_009

Geometric discrepancy: 0.1316

The information below is about J4_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.5

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

5TCU|1|B|G|2670
5TCU|1|B|A|2671
5TCU|1|B|G|2672
5TCU|1|B|C|2673
*
5TCU|1|B|G|2701
5TCU|1|B|A|2702
5TCU|1|B|C|2703
*
5TCU|1|B|G|2758
5TCU|1|B|G|2759
5TCU|1|B|A|2760
5TCU|1|B|C|2761
5TCU|1|B|G|2762
*
5TCU|1|B|C|2796
5TCU|1|B|C|2797
5TCU|1|B|C|2798

Current chains

Chain B

23S RRNA

Nearby chains

Chain LC

50S ribosomal protein L3

Chain LM

50S ribosomal protein L13

Chain LN

50S ribosomal protein L14