J4_5TCU_015

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAAAG*CC*GAGC*GG

Length

14 nucleotides

Bulged bases

5TCU|1|B|G|1309, 5TCU|1|B|A|1312, 5TCU|1|B|G|1691

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5TCU_015 not in the Motif Atlas

Homologous match to J4_4WF9_004

Geometric discrepancy: 0.1461

The information below is about J4_4WF9_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

5TCU|1|B|C|1308
5TCU|1|B|G|1309
5TCU|1|B|A|1310
5TCU|1|B|A|1311
5TCU|1|B|A|1312
5TCU|1|B|G|1313
*
5TCU|1|B|C|1331
5TCU|1|B|C|1332
*
5TCU|1|B|G|1689
5TCU|1|B|A|1690
5TCU|1|B|G|1691
5TCU|1|B|C|1692
*
5TCU|1|B|G|2036
5TCU|1|B|G|2037

Current chains

Chain B

23S RRNA

Nearby chains

Chain L5

50S ribosomal protein L22

Chain LE

50S ribosomal protein L32

Chain LQ

50S ribosomal protein L17