J4_5TGM_012

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UC*GAGUCG*CUAAGUG*UAAA

Length

19 nucleotides

Bulged bases

5TGM|1|5|U|298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5TGM_012 not in the Motif Atlas

Homologous match to J4_8P9A_012

Geometric discrepancy: 0.0772

The information below is about J4_8P9A_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5TGM|1|5|U|112
5TGM|1|5|C|113
*
5TGM|1|5|G|267
5TGM|1|5|A|268
5TGM|1|5|G|269
5TGM|1|5|U|270
5TGM|1|5|C|271
5TGM|1|5|G|272
*
5TGM|1|5|C|293
5TGM|1|5|U|294
5TGM|1|5|A|295
5TGM|1|5|A|296
5TGM|1|5|G|297
5TGM|1|5|U|298
5TGM|1|5|G|299
*
5TGM|1|5|U|316
5TGM|1|5|A|317
5TGM|1|5|A|318
5TGM|1|5|A|319

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain m3

60S ribosomal protein L13-A

Chain m5

60S ribosomal protein L15-A

Chain o5

60S ribosomal protein L35-A

Chain o6

60S ribosomal protein L36-A