J4_5U4I_001

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CC*GAGUAGG*CUGAAUAUG*CAAG

Length

22 nucleotides

Bulged bases

5U4I|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5U4I|1|A|C|268
5U4I|1|A|C|269
*
5U4I|1|A|G|370
5U4I|1|A|A|371
5U4I|1|A|G|372
5U4I|1|A|U|373
5U4I|1|A|A|374
5U4I|1|A|G|375
5U4I|1|A|G|376
*
5U4I|1|A|C|398
5U4I|1|A|U|399
5U4I|1|A|G|400
5U4I|1|A|A|401
5U4I|1|A|A|402
5U4I|1|A|U|403
5U4I|1|A|A|404
5U4I|1|A|U|405
5U4I|1|A|G|406
*
5U4I|1|A|C|421
5U4I|1|A|A|422
5U4I|1|A|A|423
5U4I|1|A|G|424

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain Y

50S ribosomal protein L28