J4_5U4I_002

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5U4I_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.131

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

5U4I|1|A|G|297
5U4I|1|A|G|298
5U4I|1|A|A|299
5U4I|1|A|A|300
5U4I|1|A|G|301
*
5U4I|1|A|C|316
5U4I|1|A|G|317
5U4I|1|A|C|318
5U4I|1|A|G|319
*
5U4I|1|A|C|323
5U4I|1|A|A|324
5U4I|1|A|G|325
*
5U4I|1|A|C|337
5U4I|1|A|G|338
5U4I|1|A|U|339
5U4I|1|A|A|340
5U4I|1|A|C|341

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain V

50S ribosomal protein L24