J4_5U9F_001

3D structure

PDB id

5U9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

5U9F|1|01|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5U9F_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1628

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5U9F|1|01|C|268
5U9F|1|01|C|269
*
5U9F|1|01|G|370
5U9F|1|01|A|371
5U9F|1|01|G|372
5U9F|1|01|U|373
5U9F|1|01|A|374
5U9F|1|01|G|375
*
5U9F|1|01|U|399
5U9F|1|01|G|400
5U9F|1|01|A|401
5U9F|1|01|A|402
5U9F|1|01|U|403
5U9F|1|01|A|404
5U9F|1|01|U|405
5U9F|1|01|G|406
*
5U9F|1|01|C|421
5U9F|1|01|A|422
5U9F|1|01|A|423
5U9F|1|01|G|424

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 09

50S ribosomal protein L9

Chain 26

50S ribosomal protein L28