3D structure

PDB id
5U9F (explore in PDB, NAKB, or RNA 3D Hub)
Description
3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GGGC*GAC*GGAAG*UGC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_5U9F_010 not in the Motif Atlas
Homologous match to J4_5J7L_028
Geometric discrepancy: 0.1137
The information below is about J4_5J7L_028
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_77044.4
Basepair signature
cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
Number of instances in this motif group
3

Unit IDs

5U9F|1|01|G|2643
5U9F|1|01|G|2644
5U9F|1|01|G|2645
5U9F|1|01|C|2646
*
5U9F|1|01|G|2674
5U9F|1|01|A|2675
5U9F|1|01|C|2676
*
5U9F|1|01|G|2731
5U9F|1|01|G|2732
5U9F|1|01|A|2733
5U9F|1|01|A|2734
5U9F|1|01|G|2735
*
5U9F|1|01|U|2769
5U9F|1|01|G|2770
5U9F|1|01|C|2771

Current chains

Chain 01
23S ribosomal RNA

Nearby chains

Chain 05
50S ribosomal protein L3
Chain 12
50S ribosomal protein L13
Chain 13
50S ribosomal protein L14

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