J4_5U9F_015

3D structure

PDB id

5U9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGG*CGU*AAGGUCG*CC

Length

16 nucleotides

Bulged bases

5U9F|1|X|U|8, 5U9F|1|X|U|47, 5U9F|1|X|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5U9F_015 not in the Motif Atlas

Homologous match to J4_1IL2_001

Geometric discrepancy: 0.3102

The information below is about J4_1IL2_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.28

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

55

Unit IDs

5U9F|1|X|G|7
5U9F|1|X|U|8
5U9F|1|X|G|9
5U9F|1|X|G|10
*
5U9F|1|X|C|25
5U9F|1|X|G|26
5U9F|1|X|U|27
*
5U9F|1|X|A|43
5U9F|1|X|A|44
5U9F|1|X|G|45
5U9F|1|X|G|46
5U9F|1|X|U|47
5U9F|1|X|C|48
5U9F|1|X|G|49
*
5U9F|1|X|C|65
5U9F|1|X|C|66

Current chains

Chain X

fMet-tRNA (P- and E-site)

Nearby chains

Chain 31

50S ribosomal protein L33

Chain G

30S ribosomal protein S7