J4_5U9G_001

3D structure

PDB id

5U9G (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

5U9G|1|01|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5U9G_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1614

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5U9G|1|01|C|268
5U9G|1|01|C|269
*
5U9G|1|01|G|370
5U9G|1|01|A|371
5U9G|1|01|G|372
5U9G|1|01|U|373
5U9G|1|01|A|374
5U9G|1|01|G|375
*
5U9G|1|01|U|399
5U9G|1|01|G|400
5U9G|1|01|A|401
5U9G|1|01|A|402
5U9G|1|01|U|403
5U9G|1|01|A|404
5U9G|1|01|U|405
5U9G|1|01|G|406
*
5U9G|1|01|C|421
5U9G|1|01|A|422
5U9G|1|01|A|423
5U9G|1|01|G|424

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 09

50S ribosomal protein L9

Chain 26

50S ribosomal protein L28