J4_5UQ7_005

3D structure

PDB id

5UQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ('in' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UC*GGUUAG*CU*ACCCGUA

Length

17 nucleotides

Bulged bases

5UQ7|1|A|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5UQ7_005 not in the Motif Atlas

Homologous match to J4_9DFE_005

Geometric discrepancy: 0.093

The information below is about J4_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.1

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

5UQ7|1|A|U|1313
5UQ7|1|A|C|1314
*
5UQ7|1|A|G|1338
5UQ7|1|A|G|1339
5UQ7|1|A|U|1340
5UQ7|1|A|U|1341
5UQ7|1|A|A|1342
5UQ7|1|A|G|1343
*
5UQ7|1|A|C|1404
5UQ7|1|A|U|1405
*
5UQ7|1|A|A|1597
5UQ7|1|A|C|1598
5UQ7|1|A|C|1599
5UQ7|1|A|C|1600
5UQ7|1|A|G|1601
5UQ7|1|A|U|1602
5UQ7|1|A|A|1603

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain X

50S ribosomal protein L23