J4_5UQ7_011

3D structure

PDB id

5UQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ('in' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

5UQ7|1|a|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5UQ7_011 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.1182

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_90044.1

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5UQ7|1|a|G|115
5UQ7|1|a|A|116
5UQ7|1|a|G|117
5UQ7|1|a|U|118
5UQ7|1|a|A|119
5UQ7|1|a|A|120
5UQ7|1|a|C|121
5UQ7|1|a|G|122
*
5UQ7|1|a|U|239
5UQ7|1|a|C|240
*
5UQ7|1|a|G|286
5UQ7|1|a|U|287
5UQ7|1|a|A|288
5UQ7|1|a|G|289
*
5UQ7|1|a|C|311
5UQ7|1|a|C|312

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17