J4_5UQ8_002

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5UQ8_002 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0946

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

5UQ8|1|A|C|297
5UQ8|1|A|G|298
5UQ8|1|A|A|299
5UQ8|1|A|A|300
5UQ8|1|A|G|301
*
5UQ8|1|A|C|316
5UQ8|1|A|G|317
5UQ8|1|A|C|318
5UQ8|1|A|C|319
*
5UQ8|1|A|G|323
5UQ8|1|A|A|324
5UQ8|1|A|G|325
*
5UQ8|1|A|C|337
5UQ8|1|A|G|338
5UQ8|1|A|U|339
5UQ8|1|A|A|340
5UQ8|1|A|G|341

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L4

Chain Y

50S ribosomal protein L24