J4_5UQ8_006

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAC*GC*GG*CC

Length

9 nucleotides

Bulged bases

5UQ8|1|A|A|1445|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5UQ8_006 not in the Motif Atlas

Homologous match to J4_9DFE_006

Geometric discrepancy: 0.218

The information below is about J4_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_75575.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5UQ8|1|A|G|1444
5UQ8|1|A|A|1445|||A
5UQ8|1|A|C|1445|||B
*
5UQ8|1|A|G|1466
5UQ8|1|A|C|1467
*
5UQ8|1|A|G|1525
5UQ8|1|A|G|1526
*
5UQ8|1|A|C|1546
5UQ8|1|A|C|1547

Current chains

Chain A

23S rRNA

Nearby chains