J4_5UQ8_007

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5UQ8_007 not in the Motif Atlas

Homologous match to J4_9DFE_007

Geometric discrepancy: 0.0827

The information below is about J4_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5UQ8|1|A|G|1772
5UQ8|1|A|A|1773
5UQ8|1|A|C|1774
5UQ8|1|A|U|1775
5UQ8|1|A|G|1776
*
5UQ8|1|A|C|1788
5UQ8|1|A|A|1789
5UQ8|1|A|C|1790
5UQ8|1|A|A|1791
5UQ8|1|A|G|1792
*
5UQ8|1|A|C|1827
5UQ8|1|A|G|1828
5UQ8|1|A|A|1829
5UQ8|1|A|C|1830
*
5UQ8|1|A|G|1975
5UQ8|1|A|U|1976
5UQ8|1|A|A|1977
5UQ8|1|A|A|1978
5UQ8|1|A|C|1979

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA