3D structure

PDB id
5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GACUG*CACAG*CGAC*GUAAC
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_5UQ8_007 not in the Motif Atlas
Homologous match to J4_9DFE_007
Geometric discrepancy: 0.0827
The information below is about J4_9DFE_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61477.5
Basepair signature
cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
Number of instances in this motif group
4

Unit IDs

5UQ8|1|A|G|1772
5UQ8|1|A|A|1773
5UQ8|1|A|C|1774
5UQ8|1|A|U|1775
5UQ8|1|A|G|1776
*
5UQ8|1|A|C|1788
5UQ8|1|A|A|1789
5UQ8|1|A|C|1790
5UQ8|1|A|A|1791
5UQ8|1|A|G|1792
*
5UQ8|1|A|C|1827
5UQ8|1|A|G|1828
5UQ8|1|A|A|1829
5UQ8|1|A|C|1830
*
5UQ8|1|A|G|1975
5UQ8|1|A|U|1976
5UQ8|1|A|A|1977
5UQ8|1|A|A|1978
5UQ8|1|A|C|1979

Current chains

Chain A
23S rRNA

Nearby chains

Chain D
50S ribosomal protein L2
Chain a
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1974 s