J4_5UQ8_015

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUAG*CAG*CGUGUCC*GU

Length

16 nucleotides

Bulged bases

5UQ8|1|z|U|8, 5UQ8|1|z|U|47, 5UQ8|1|z|C|48

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5UQ8_015 not in the Motif Atlas

Homologous match to J4_6UGG_002

Geometric discrepancy: 0.387

The information below is about J4_6UGG_002

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

48

Unit IDs

5UQ8|1|z|A|7
5UQ8|1|z|U|8
5UQ8|1|z|A|9
5UQ8|1|z|G|10
*
5UQ8|1|z|C|25
5UQ8|1|z|A|26
5UQ8|1|z|G|27
*
5UQ8|1|z|C|43
5UQ8|1|z|G|44
5UQ8|1|z|U|45
5UQ8|1|z|G|46
5UQ8|1|z|U|47
5UQ8|1|z|C|48
5UQ8|1|z|C|49
*
5UQ8|1|z|G|65
5UQ8|1|z|U|66

Current chains

Chain z

E-site tRNA Phe

Nearby chains

Chain 6

50S ribosomal protein L33