J4_5UYK_001

3D structure

PDB id

5UYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

5UYK|1|01|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5UYK_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.162

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5UYK|1|01|C|268
5UYK|1|01|C|269
*
5UYK|1|01|G|370
5UYK|1|01|A|371
5UYK|1|01|G|372
5UYK|1|01|U|373
5UYK|1|01|A|374
5UYK|1|01|G|375
*
5UYK|1|01|U|399
5UYK|1|01|G|400
5UYK|1|01|A|401
5UYK|1|01|A|402
5UYK|1|01|U|403
5UYK|1|01|A|404
5UYK|1|01|U|405
5UYK|1|01|G|406
*
5UYK|1|01|C|421
5UYK|1|01|A|422
5UYK|1|01|A|423
5UYK|1|01|G|424

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 09

50S ribosomal protein L9

Chain 26

50S ribosomal protein L28