3D structure

PDB id
5UYK (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
AACUG*CACAG*UGAC*GUAAU
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_5UYK_007 not in the Motif Atlas
Homologous match to J4_4WF9_007
Geometric discrepancy: 0.1134
The information below is about J4_4WF9_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61477.5
Basepair signature
cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
Number of instances in this motif group
4

Unit IDs

5UYK|1|01|A|1772
5UYK|1|01|A|1773
5UYK|1|01|C|1774
5UYK|1|01|U|1775
5UYK|1|01|G|1776
*
5UYK|1|01|C|1788
5UYK|1|01|A|1789
5UYK|1|01|C|1790
5UYK|1|01|A|1791
5UYK|1|01|G|1792
*
5UYK|1|01|U|1827
5UYK|1|01|G|1828
5UYK|1|01|A|1829
5UYK|1|01|C|1830
*
5UYK|1|01|G|1975
5UYK|1|01|U|1976
5UYK|1|01|A|1977
5UYK|1|01|A|1978
5UYK|1|01|U|1979

Current chains

Chain 01
23S ribosomal RNA

Nearby chains

Chain 04
50S ribosomal protein L2
Chain A
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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