J4_5UYK_012
3D structure
- PDB id
- 5UYK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GAG*CAUAACG*CCAAAG*UGC
- Length
- 19 nucleotides
- Bulged bases
- 5UYK|1|A|C|183, 5UYK|1|A|A|197
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5UYK_012 not in the Motif Atlas
- Homologous match to J4_5J7L_002
- Geometric discrepancy: 0.1636
- The information below is about J4_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_01665.1
- Basepair signature
- cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
5UYK|1|A|G|142
5UYK|1|A|A|143
5UYK|1|A|G|144
*
5UYK|1|A|C|178
5UYK|1|A|A|179
5UYK|1|A|U|180
5UYK|1|A|A|181
5UYK|1|A|A|182
5UYK|1|A|C|183
5UYK|1|A|G|184
*
5UYK|1|A|C|193
5UYK|1|A|C|194
5UYK|1|A|A|195
5UYK|1|A|A|196
5UYK|1|A|A|197
5UYK|1|A|G|198
*
5UYK|1|A|U|219
5UYK|1|A|G|220
5UYK|1|A|C|221
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain T
- 30S ribosomal protein S20
Coloring options: