J4_5UYK_016
3D structure
- PDB id
- 5UYK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AUAG*CAG*CGUGUCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 5UYK|1|Y|U|8, 5UYK|1|Y|U|47, 5UYK|1|Y|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5UYK_016 not in the Motif Atlas
- Homologous match to J4_5WT1_002
- Geometric discrepancy: 0.358
- The information below is about J4_5WT1_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_40477.1
- Basepair signature
- cWW-F-cWW-F-cWW-cHW-F-F-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
5UYK|1|Y|A|7
5UYK|1|Y|U|8
5UYK|1|Y|A|9
5UYK|1|Y|G|10
*
5UYK|1|Y|C|25
5UYK|1|Y|A|26
5UYK|1|Y|G|27
*
5UYK|1|Y|C|43
5UYK|1|Y|G|44
5UYK|1|Y|U|45
5UYK|1|Y|G|46
5UYK|1|Y|U|47
5UYK|1|Y|C|48
5UYK|1|Y|C|49
*
5UYK|1|Y|G|65
5UYK|1|Y|U|66
Current chains
- Chain Y
- tRNAPhe
Nearby chains
- Chain L
- 30S ribosomal protein S12
- Chain Z
- Elongation factor Tu 2
Coloring options: