J4_5UYL_001

3D structure

PDB id

5UYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex base-paired to A site codon (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

5UYL|1|01|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5UYL_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1674

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5UYL|1|01|C|268
5UYL|1|01|C|269
*
5UYL|1|01|G|370
5UYL|1|01|A|371
5UYL|1|01|G|372
5UYL|1|01|U|373
5UYL|1|01|A|374
5UYL|1|01|G|375
*
5UYL|1|01|U|399
5UYL|1|01|G|400
5UYL|1|01|A|401
5UYL|1|01|A|402
5UYL|1|01|U|403
5UYL|1|01|A|404
5UYL|1|01|U|405
5UYL|1|01|G|406
*
5UYL|1|01|C|421
5UYL|1|01|A|422
5UYL|1|01|A|423
5UYL|1|01|G|424

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 09

50S ribosomal protein L9

Chain 26

50S ribosomal protein L28