J4_5UYL_010
3D structure
- PDB id
- 5UYL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with cognate ternary complex base-paired to A site codon (Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GGGC*GAC*GGAAG*UGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5UYL_010 not in the Motif Atlas
- Homologous match to J4_5J7L_028
- Geometric discrepancy: 0.0894
- The information below is about J4_5J7L_028
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77044.4
- Basepair signature
- cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
5UYL|1|01|G|2643
5UYL|1|01|G|2644
5UYL|1|01|G|2645
5UYL|1|01|C|2646
*
5UYL|1|01|G|2674
5UYL|1|01|A|2675
5UYL|1|01|C|2676
*
5UYL|1|01|G|2731
5UYL|1|01|G|2732
5UYL|1|01|A|2733
5UYL|1|01|A|2734
5UYL|1|01|G|2735
*
5UYL|1|01|U|2769
5UYL|1|01|G|2770
5UYL|1|01|C|2771
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 05
- 50S ribosomal protein L3
- Chain 12
- 50S ribosomal protein L13
- Chain 13
- 50S ribosomal protein L14
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