J4_5UYL_012

3D structure

PDB id

5UYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex base-paired to A site codon (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

5UYL|1|A|C|183, 5UYL|1|A|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5UYL_012 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1536

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5UYL|1|A|G|142
5UYL|1|A|A|143
5UYL|1|A|G|144
*
5UYL|1|A|C|178
5UYL|1|A|A|179
5UYL|1|A|U|180
5UYL|1|A|A|181
5UYL|1|A|A|182
5UYL|1|A|C|183
5UYL|1|A|G|184
*
5UYL|1|A|C|193
5UYL|1|A|C|194
5UYL|1|A|A|195
5UYL|1|A|A|196
5UYL|1|A|A|197
5UYL|1|A|G|198
*
5UYL|1|A|U|219
5UYL|1|A|G|220
5UYL|1|A|C|221

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S20