J4_5UYL_016
3D structure
- PDB id
- 5UYL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with cognate ternary complex base-paired to A site codon (Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AUAG*CAG*CGUGUCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 5UYL|1|Y|U|8, 5UYL|1|Y|U|47, 5UYL|1|Y|C|48
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5UYL_016 not in the Motif Atlas
- Homologous match to J4_5WT1_002
- Geometric discrepancy: 0.2605
- The information below is about J4_5WT1_002
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_40477.2
- Basepair signature
- cWW-F-cWW-F-cWW-F-F-F-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
5UYL|1|Y|A|7
5UYL|1|Y|U|8
5UYL|1|Y|A|9
5UYL|1|Y|G|10
*
5UYL|1|Y|C|25
5UYL|1|Y|A|26
5UYL|1|Y|G|27
*
5UYL|1|Y|C|43
5UYL|1|Y|G|44
5UYL|1|Y|U|45
5UYL|1|Y|G|46
5UYL|1|Y|U|47
5UYL|1|Y|C|48
5UYL|1|Y|C|49
*
5UYL|1|Y|G|65
5UYL|1|Y|U|66
Current chains
- Chain Y
- tRNAPhe
Nearby chains
- Chain 01
- Large subunit ribosomal RNA; LSU rRNA
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain L
- 30S ribosomal protein S12
- Chain Z
- Elongation factor Tu 2
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