J4_5UYM_001

3D structure

PDB id

5UYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

5UYM|1|01|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5UYM_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1475

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5UYM|1|01|C|268
5UYM|1|01|C|269
*
5UYM|1|01|G|370
5UYM|1|01|A|371
5UYM|1|01|G|372
5UYM|1|01|U|373
5UYM|1|01|A|374
5UYM|1|01|G|375
*
5UYM|1|01|U|399
5UYM|1|01|G|400
5UYM|1|01|A|401
5UYM|1|01|A|402
5UYM|1|01|U|403
5UYM|1|01|A|404
5UYM|1|01|U|405
5UYM|1|01|G|406
*
5UYM|1|01|C|421
5UYM|1|01|A|422
5UYM|1|01|A|423
5UYM|1|01|G|424

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 09

50S ribosomal protein L9

Chain 26

50S ribosomal protein L28