J4_5UYM_005

3D structure

PDB id

5UYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

5UYM|1|01|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5UYM_005 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0855

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5UYM|1|01|U|1313
5UYM|1|01|C|1314
*
5UYM|1|01|G|1338
5UYM|1|01|G|1339
5UYM|1|01|U|1340
5UYM|1|01|G|1341
5UYM|1|01|A|1342
5UYM|1|01|G|1343
*
5UYM|1|01|C|1404
5UYM|1|01|U|1405
*
5UYM|1|01|A|1597
5UYM|1|01|A|1598
5UYM|1|01|U|1599
5UYM|1|01|C|1600
5UYM|1|01|G|1601
5UYM|1|01|U|1602
5UYM|1|01|A|1603

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 22

50S ribosomal protein L23