J4_5UYM_012

3D structure

PDB id

5UYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

5UYM|1|A|C|183, 5UYM|1|A|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5UYM_012 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1461

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5UYM|1|A|G|142
5UYM|1|A|A|143
5UYM|1|A|G|144
*
5UYM|1|A|C|178
5UYM|1|A|A|179
5UYM|1|A|U|180
5UYM|1|A|A|181
5UYM|1|A|A|182
5UYM|1|A|C|183
5UYM|1|A|G|184
*
5UYM|1|A|C|193
5UYM|1|A|C|194
5UYM|1|A|A|195
5UYM|1|A|A|196
5UYM|1|A|A|197
5UYM|1|A|G|198
*
5UYM|1|A|U|219
5UYM|1|A|G|220
5UYM|1|A|C|221

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S20