J4_5UYN_016
3D structure
- PDB id
- 5UYN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with near-cognate ternary complex not base-paired to A site codon (Structure I-nc)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UUAG*CAG*UUGGUCG*CA
- Length
- 16 nucleotides
- Bulged bases
- 5UYN|1|Y|U|8, 5UYN|1|Y|U|47, 5UYN|1|Y|C|48
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5UYN_016 not in the Motif Atlas
- Homologous match to J4_6CFJ_015
- Geometric discrepancy: 0.4133
- The information below is about J4_6CFJ_015
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
5UYN|1|Y|U|7
5UYN|1|Y|U|8
5UYN|1|Y|A|9
5UYN|1|Y|G|10
*
5UYN|1|Y|C|25
5UYN|1|Y|A|26
5UYN|1|Y|G|27
*
5UYN|1|Y|U|43
5UYN|1|Y|U|44
5UYN|1|Y|G|45
5UYN|1|Y|G|46
5UYN|1|Y|U|47
5UYN|1|Y|C|48
5UYN|1|Y|G|49
*
5UYN|1|Y|C|65
5UYN|1|Y|A|66
Current chains
- Chain Y
- tRNALys
Nearby chains
- Chain 01
- Large subunit ribosomal RNA; LSU rRNA
- Chain L
- 30S ribosomal protein S12
- Chain Z
- Elongation factor Tu 2
Coloring options: