J4_5UYP_001

3D structure

PDB id

5UYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

5UYP|1|01|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5UYP_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1952

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5UYP|1|01|C|268
5UYP|1|01|C|269
*
5UYP|1|01|G|370
5UYP|1|01|A|371
5UYP|1|01|G|372
5UYP|1|01|U|373
5UYP|1|01|A|374
5UYP|1|01|G|375
*
5UYP|1|01|U|399
5UYP|1|01|G|400
5UYP|1|01|A|401
5UYP|1|01|A|402
5UYP|1|01|U|403
5UYP|1|01|A|404
5UYP|1|01|U|405
5UYP|1|01|G|406
*
5UYP|1|01|C|421
5UYP|1|01|A|422
5UYP|1|01|A|423
5UYP|1|01|G|424

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 09

50S ribosomal protein L9

Chain 26

50S ribosomal protein L28