J4_5UYP_012

3D structure

PDB id

5UYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

5UYP|1|A|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5UYP_012 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1552

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5UYP|1|A|G|142
5UYP|1|A|A|143
5UYP|1|A|G|144
*
5UYP|1|A|C|178
5UYP|1|A|A|179
5UYP|1|A|U|180
5UYP|1|A|A|181
5UYP|1|A|A|182
5UYP|1|A|C|183
5UYP|1|A|G|184
*
5UYP|1|A|C|193
5UYP|1|A|C|194
5UYP|1|A|A|195
5UYP|1|A|A|196
5UYP|1|A|A|197
5UYP|1|A|G|198
*
5UYP|1|A|U|219
5UYP|1|A|G|220
5UYP|1|A|C|221

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S20