J4_5UYQ_001

3D structure

PDB id

5UYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

5UYQ|1|01|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5UYQ_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1828

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5UYQ|1|01|C|268
5UYQ|1|01|C|269
*
5UYQ|1|01|G|370
5UYQ|1|01|A|371
5UYQ|1|01|G|372
5UYQ|1|01|U|373
5UYQ|1|01|A|374
5UYQ|1|01|G|375
*
5UYQ|1|01|U|399
5UYQ|1|01|G|400
5UYQ|1|01|A|401
5UYQ|1|01|A|402
5UYQ|1|01|U|403
5UYQ|1|01|A|404
5UYQ|1|01|U|405
5UYQ|1|01|G|406
*
5UYQ|1|01|C|421
5UYQ|1|01|A|422
5UYQ|1|01|A|423
5UYQ|1|01|G|424

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 09

50S ribosomal protein L9

Chain 26

50S ribosomal protein L28