J4_5UYQ_012

3D structure

PDB id

5UYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

5UYQ|1|A|C|183, 5UYQ|1|A|A|197

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5UYQ_012 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1739

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5UYQ|1|A|G|142
5UYQ|1|A|A|143
5UYQ|1|A|G|144
*
5UYQ|1|A|C|178
5UYQ|1|A|A|179
5UYQ|1|A|U|180
5UYQ|1|A|A|181
5UYQ|1|A|A|182
5UYQ|1|A|C|183
5UYQ|1|A|G|184
*
5UYQ|1|A|C|193
5UYQ|1|A|C|194
5UYQ|1|A|A|195
5UYQ|1|A|A|196
5UYQ|1|A|A|197
5UYQ|1|A|G|198
*
5UYQ|1|A|U|219
5UYQ|1|A|G|220
5UYQ|1|A|C|221

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S20