J4_5V7Q_006

3D structure

PDB id

5V7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGACUG*CACAG*UGAC*GUAACG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5V7Q|1|A|C|2005
5V7Q|1|A|G|2006
5V7Q|1|A|A|2007
5V7Q|1|A|C|2008
5V7Q|1|A|U|2009
5V7Q|1|A|G|2010
*
5V7Q|1|A|C|2022
5V7Q|1|A|A|2023
5V7Q|1|A|C|2024
5V7Q|1|A|A|2025
5V7Q|1|A|G|2026
*
5V7Q|1|A|U|2061
5V7Q|1|A|G|2062
5V7Q|1|A|A|2063
5V7Q|1|A|C|2064
*
5V7Q|1|A|G|2213
5V7Q|1|A|U|2214
5V7Q|1|A|A|2215
5V7Q|1|A|A|2216
5V7Q|1|A|C|2217
5V7Q|1|A|G|2218

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2