J4_5V7Q_011

3D structure

PDB id

5V7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

5V7Q|1|A|U|2209

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5V7Q_011 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.1528

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

5V7Q|1|A|C|2067
5V7Q|1|A|U|2068
5V7Q|1|A|G|2069
*
5V7Q|1|A|C|2143
5V7Q|1|A|G|2144
*
5V7Q|1|A|C|2162
5V7Q|1|A|C|2163
5V7Q|1|A|U|2164
5V7Q|1|A|A|2165
5V7Q|1|A|A|2166
5V7Q|1|A|G|2167
5V7Q|1|A|G|2168
5V7Q|1|A|U|2169
5V7Q|1|A|A|2170
5V7Q|1|A|G|2171
*
5V7Q|1|A|C|2205
5V7Q|1|A|G|2206
5V7Q|1|A|A|2207
5V7Q|1|A|A|2208
5V7Q|1|A|U|2209
5V7Q|1|A|G|2210

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2