J4_5V8I_005

3D structure

PDB id

5V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S ribosome lacking ribosomal protein uS17

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

5V8I|1|1A|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5V8I_005 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.0787

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5V8I|1|1A|G|1310
5V8I|1|1A|G|1311
5V8I|1|1A|U|1312
5V8I|1|1A|U|1313
5V8I|1|1A|C|1314
*
5V8I|1|1A|G|1338
5V8I|1|1A|G|1339
5V8I|1|1A|U|1340
5V8I|1|1A|U|1341
5V8I|1|1A|A|1342
5V8I|1|1A|G|1343
*
5V8I|1|1A|C|1404
5V8I|1|1A|U|1405
*
5V8I|1|1A|A|1597
5V8I|1|1A|C|1598
5V8I|1|1A|C|1599
5V8I|1|1A|C|1600
5V8I|1|1A|G|1601
5V8I|1|1A|U|1602
5V8I|1|1A|A|1603
5V8I|1|1A|C|1604

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1X

50S ribosomal protein L23