J4_5V8I_025

3D structure

PDB id

5V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S ribosome lacking ribosomal protein uS17

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GGGC*GAC*GGAAG*CGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5V8I_025 not in the Motif Atlas

Homologous match to J4_9DFE_010

Geometric discrepancy: 0.0997

The information below is about J4_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

5V8I|1|2A|G|2643
5V8I|1|2A|G|2644
5V8I|1|2A|G|2645
5V8I|1|2A|C|2646
*
5V8I|1|2A|G|2674
5V8I|1|2A|A|2675
5V8I|1|2A|C|2676
*
5V8I|1|2A|G|2731
5V8I|1|2A|G|2732
5V8I|1|2A|A|2733
5V8I|1|2A|A|2734
5V8I|1|2A|G|2735
*
5V8I|1|2A|C|2769
5V8I|1|2A|G|2770
5V8I|1|2A|C|2771

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2N

50S ribosomal protein L13

Chain 2O

50S ribosomal protein L14