J4_5V93_003

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGACAAG*CC*GUAC*GG

Length

15 nucleotides

Bulged bases

5V93|1|A|G|1402, 5V93|1|A|A|1403, 5V93|1|A|C|1404, 5V93|1|A|A|1405, 5V93|1|A|A|1406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5V93_003 not in the Motif Atlas

Homologous match to J4_7A0S_004

Geometric discrepancy: 0.4493

The information below is about J4_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

5V93|1|A|C|1401
5V93|1|A|G|1402
5V93|1|A|A|1403
5V93|1|A|C|1404
5V93|1|A|A|1405
5V93|1|A|A|1406
5V93|1|A|G|1407
*
5V93|1|A|C|1425
5V93|1|A|C|1426
*
5V93|1|A|G|1880
5V93|1|A|U|1881
5V93|1|A|A|1882
5V93|1|A|C|1883
*
5V93|1|A|G|2247
5V93|1|A|G|2248

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain N

50S ribosomal protein L17

Chain S

50S ribosomal protein L22