J4_5VP2_012

3D structure

PDB id

5VP2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with madumycin II and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAGG*CCAUGUG*CAAAGG*CCGC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5VP2|1|1a|G|142
5VP2|1|1a|A|143
5VP2|1|1a|G|144
5VP2|1|1a|G|145
*
5VP2|1|1a|C|177
5VP2|1|1a|C|178
5VP2|1|1a|A|179
5VP2|1|1a|U|180
5VP2|1|1a|G|181
5VP2|1|1a|U|182
5VP2|1|1a|G|183
*
5VP2|1|1a|C|194
5VP2|1|1a|A|195
5VP2|1|1a|A|196
5VP2|1|1a|A|197
5VP2|1|1a|G|198
5VP2|1|1a|G|199
*
5VP2|1|1a|C|218
5VP2|1|1a|C|219
5VP2|1|1a|G|220
5VP2|1|1a|C|221

Current chains

Chain 1a

16S ribosomal RNA

Nearby chains

Chain 1t

30S ribosomal protein S20