3D structure

PDB id
5VPO (explore in PDB, NAKB, or RNA 3D Hub)
Description
The 70S P-site ASL SufA6 complex
Experimental method
X-RAY DIFFRACTION
Resolution
3.34 Å

Loop

Sequence
GGUUC*GGUUAG*CU*ACCCGUAC
Length
21 nucleotides
Bulged bases
5VPO|1|RA|U|1341
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_5VPO_007 not in the Motif Atlas
Homologous match to J4_9DFE_004
Geometric discrepancy: 0.0772
The information below is about J4_9DFE_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_69051.6
Basepair signature
cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

5VPO|1|RA|G|1310
5VPO|1|RA|G|1311
5VPO|1|RA|U|1312
5VPO|1|RA|U|1313
5VPO|1|RA|C|1314
*
5VPO|1|RA|G|1338
5VPO|1|RA|G|1339
5VPO|1|RA|U|1340
5VPO|1|RA|U|1341
5VPO|1|RA|A|1342
5VPO|1|RA|G|1343
*
5VPO|1|RA|C|1404
5VPO|1|RA|U|1405
*
5VPO|1|RA|A|1597
5VPO|1|RA|C|1598
5VPO|1|RA|C|1599
5VPO|1|RA|C|1600
5VPO|1|RA|G|1601
5VPO|1|RA|U|1602
5VPO|1|RA|A|1603
5VPO|1|RA|C|1604

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R7
50S ribosomal protein L34
Chain RX
50S ribosomal protein L23

Coloring options:


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