J4_5VPO_007

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

5VPO|1|RA|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5VPO_007 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.0772

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5VPO|1|RA|G|1310
5VPO|1|RA|G|1311
5VPO|1|RA|U|1312
5VPO|1|RA|U|1313
5VPO|1|RA|C|1314
*
5VPO|1|RA|G|1338
5VPO|1|RA|G|1339
5VPO|1|RA|U|1340
5VPO|1|RA|U|1341
5VPO|1|RA|A|1342
5VPO|1|RA|G|1343
*
5VPO|1|RA|C|1404
5VPO|1|RA|U|1405
*
5VPO|1|RA|A|1597
5VPO|1|RA|C|1598
5VPO|1|RA|C|1599
5VPO|1|RA|C|1600
5VPO|1|RA|G|1601
5VPO|1|RA|U|1602
5VPO|1|RA|A|1603
5VPO|1|RA|C|1604

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34

Chain RX

50S ribosomal protein L23